NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GPIPI_16928634

Scaffold GPIPI_16928634


Overview

Basic Information
Taxon OID2088090014 Open in IMG/M
Scaffold IDGPIPI_16928634 Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Iowa, Native Prairie soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2982
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013837Metagenome / Metatranscriptome268Y
F040395Metagenome / Metatranscriptome162Y
F043689Metagenome / Metatranscriptome156Y
F050357Metagenome / Metatranscriptome145N

Sequences

Protein IDFamilyRBSSequence
GPIPI_01544290F013837GGAGGMTTLMDPDRTEAPEGPRSKPAAAVDARRDTPTESRSLERSFEVASRGGYARTVVGRLAYFDEEAQTYMVLTRSGALVRVPLRDITSSRGVPRTGPIVADALSRMSRLRSATTVSPT
GPIPI_01544300F043689AGGAGGMTTLMDTVRIEAPKRSPVRPASPLDPSWDDGSEIPSSERSVQDRSRNTQWDRLAMGRGQSLWREAA
GPIPI_01544310F050357AGAAGMVYLDKGVLDLDIQDDHERALVEDVLEQTGQVTWSFSRFDEGEWQENIAEPRTERWLWFVVANILYPMGYQADLGISEDGEPTTG
GPIPI_01544330F040395N/AREAKEAASAASSTIDRGSVLRVLGIIGAGAGIPPEMSNATSWTLAESFVLLFGYVLAFVVAVWFVAWVDRKLSSRRLFREIYRELGIRRYPPR
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