NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold GPIPI_17064649

Scaffold GPIPI_17064649


Overview

Basic Information
Taxon OID2088090014 Open in IMG/M
Scaffold IDGPIPI_17064649 Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Iowa, Native Prairie soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)11509
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (53.85%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002999Metagenome / Metatranscriptome514Y
F043106Metagenome157Y

Sequences

Protein IDFamilyRBSSequence
GPIPI_00310450F043106AGGMTGHALTIGFETPQALKEFNTSWATLGVSPEESWPLPTRTFQFMLSGSEAVTMVRSKDDLVEFESWTGLPVRYGPDFMDWVRDEWAREGTPLKQLNTSLHEACHVVAGEIAGFPPAEVIGPVLACTLEEVAGVLKIAHVRYESAAVVHDPDSTKRFYTEKPTEYAAMLLAPLCVMPRLIPSATGDSDFIPDIIALMRHVPGQEDTGGLVAAATLTDRPGFLERVQLWAATLRPLIRKGGITQLPRPVGEDQARSASVG
GPIPI_00310460F002999AGTAGMNCQVKDQLVSQLIALNNKLNLLSPDLVHGDAERAEVQQQRESLYAEIKHHRAKGHEGKPCPAARQA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.