NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GPIPI_17214983

Scaffold GPIPI_17214983


Overview

Basic Information
Taxon OID2088090014 Open in IMG/M
Scaffold IDGPIPI_17214983 Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Iowa, Native Prairie soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)3600
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008923Metagenome / Metatranscriptome326Y
F044035Metagenome / Metatranscriptome155N

Sequences

Protein IDFamilyRBSSequence
GPIPI_00181710F008923GGAMVAAYALALQVLLTGVAAGHAMSAADASGNGLFVVCHGDGSSDNQGLPDTEPPVRPPCIFCTLAKAPCAVLPTDHGVVISHAVEISNAALQTDGRIIAFHSPTGQYQRGPPLSISIFG
GPIPI_00181750F044035N/AMRRFGPWLLGLFLIAQLAGVMPVMFDHAVHVFESQPAFADAHDHSAPGRHGDHRHGAGDVKDECCSLHHHLVGIAHVSIPTAAFSLVAMPLLAPPLRTLASADPILLERPPKSSSLI
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