NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GPIPI_17268428

Scaffold GPIPI_17268428


Overview

Basic Information
Taxon OID2088090014 Open in IMG/M
Scaffold IDGPIPI_17268428 Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Iowa, Native Prairie soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)3798
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000532Metagenome / Metatranscriptome1046Y
F068064Metagenome / Metatranscriptome125Y
F082282Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
GPIPI_03181620F068064AGGAGVKKNYQRKERKSNHKFEVVRGQELLVRVPLPMAEVWAEMQ
GPIPI_03181650F082282AGCAGMEKVIIALIGCLPLCSSVASQERPRELRGVGHVLGETAEQFFSVGSVGELVHACEKKDWKTVKYLAKTVEQQSKVKAKEFCDKVAVIKQGATAGERQEFRGSGDIETMRTDSFTLDRGHLVKIRMIYAMPIVVLEGFRPKSFAELFAGLREAYGDPSKSYSEPVVSTYGVKRDAHRAIWEGKQNVISVTEHLGEHGQIEIVAETLAEYERDAQAPKTANPLQ
GPIPI_03181660F000532AGGVTLIKQRLNIEAVRTPGKTGQFDVIAGGEKIAERGGNWLTRSFGAGYPDLEKVIEQLVEKNRAGTVR
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