NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GPIPI_17273716

Scaffold GPIPI_17273716


Overview

Basic Information
Taxon OID2088090014 Open in IMG/M
Scaffold IDGPIPI_17273716 Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Iowa, Native Prairie soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)14151
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (42.11%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006999Metagenome / Metatranscriptome360Y
F019715Metagenome228Y

Sequences

Protein IDFamilyRBSSequence
GPIPI_00569070F006999N/AMKRLALAVLILLIPALAWADEKDTMLQALGQFEHAWRSTTPCEVSSNACQTREIWLAQQAAQAADQYLNTPDAKESHWLLVALSVIKYSQARSEAYAAYVRARNQDQDAAEKAYHSIVDQQEQDFTGQLKATLRSDENSHEIAQRFGLVDF
GPIPI_00569150F019715AGGMKLADSWPGDTLTGTASECFHDEAEEIDEVDEAQDGCGSVVWQPYVLKKTQTSNKQLHELAREIRGVEKKRGRRLRPTQYKPIFTKWESASEPFLKPGHDYFTEFLAKLDCVTVPKGETLQAAFERAKGRQPPAKVLLIRSEGVRLFASLCRELQEMAGDQPFMLHQLSVAKLFGHSDHKNVSNWIRALKTLGILKPAEAAIPNARAARYFYLEG
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