NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GPIPI_17308098

Scaffold GPIPI_17308098


Overview

Basic Information
Taxon OID2088090014 Open in IMG/M
Scaffold IDGPIPI_17308098 Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Iowa, Native Prairie soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1631
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004935Metagenome / Metatranscriptome418Y
F056105Metagenome / Metatranscriptome138N
F060376Metagenome133N

Sequences

Protein IDFamilyRBSSequence
GPIPI_01058540F060376N/AEDGVGRDKPGLRADGMLPQAETACMRITPALALSVLLGCGPLLGDTVSYRCVEEGKQTNPEAILLVTIDPLLGDMKAERYAGKTLRSRMTYQIDALNEATIRGRYVLPILGITMVLELDRIKGRVTETIGGKEPTYYNCEPPSATL
GPIPI_01058550F056105GAGGMPRAERRELLSAALTHLEAVAKLLEEAEEEVLADEARELTDKVDVVAIAEAA
GPIPI_01058560F004935N/AMSRPLKLQIVERARELIADEQFWCRRHFGEDVNGFAVSPTSASAVKRCGLGAVIAAAYQLTHNADAAYQVGYQVLRPRYGSATLIHVNDVRGHAAVLALFDEVIAAG
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