NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GPIPI_17313021

Scaffold GPIPI_17313021


Overview

Basic Information
Taxon OID2088090014 Open in IMG/M
Scaffold IDGPIPI_17313021 Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Iowa, Native Prairie soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)31256
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (68.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F074087Metagenome120Y

Sequences

Protein IDFamilyRBSSequence
GPIPI_00090120F074087GGALHLAAFVVCYDGGMKRLVLLVVVFLCVAARHVEAQGANGALEFTARVTPTAAKPEPVRDFTFYVLTKSYDDIVKEIDERDGPPAREKFIDELKISPELRTWLHKHDVMDMTLPGFDKLLTPDDVLHVPEFLLAYQRSNSGGVTNGIPVPKYREADKTENPTRYEKQHQEYLSSLKKFIASRPETMAGMELELDGVNPARKWAEVQNTHRRRVLQLAPAEAQTKYLAAKADTDLDGRAAVSGLVPGNYWVSTLALTAVAGDARLRWDVPVRIAPGQTLRIELTNLNATDNLSSR
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