NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GPIPI_17349719

Scaffold GPIPI_17349719


Overview

Basic Information
Taxon OID2088090014 Open in IMG/M
Scaffold IDGPIPI_17349719 Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Iowa, Native Prairie soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2214
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028594Metagenome / Metatranscriptome191Y
F066984Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
GPIPI_00441700F028594N/AVLTVIKVPALGYTAPTSTTVNIQPGAEHLYIAMFDSELVYLHPVGVSVTPGSYWQLHGNGAP
GPIPI_00441730F066984GAGMNCATFTIAAIAFLCGTTATGPLVTYESPCECRDNHGKHRWAEKNDPALPPAEASAIQAVTPSDTFSWQGPTEYLVPSSERIWSEQKWYALTGRVVDLRAEEDGDLHIALQDATGDKPAIFVVEIPAKPQWCELRKIVFGWTEVRFPFRVRSGRKLKVAQPPIITVIGKAFFDIGQAPADPMTKVKVCEFDYRTRCQFPSTEILVGASTRG
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