NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold GPIPI_17484853

Scaffold GPIPI_17484853


Overview

Basic Information
Taxon OID2088090014 Open in IMG/M
Scaffold IDGPIPI_17484853 Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Iowa, Native Prairie soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)6648
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (41.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001252Metagenome737Y
F004536Metagenome / Metatranscriptome434Y

Sequences

Protein IDFamilyRBSSequence
GPIPI_01598680F001252N/AMNTKLLIVVIFVSLSFAAAISADDAREQAARIVAQIQRADYEGDRAAMQRGYDALKPFVEDQKLASRIRYWRGFAQWRRAINGFNDATDPKELKRDLNTAVDEFKAAIELDPQFVDAKVGIISSLGFLLFADRQDEARKKERIDQILATEKEASAMAPDNPRLIWVHGPILWNSPPERGGGQDKAIANYERGLEICSKIKTSDNPLEPSWGKPEMMMSLAYCHLNAKSADVNAAERYARNALEIVPYWHYVRDILLPQILATKEKAK
GPIPI_01598740F004536N/AMKDKPDSANSSLSETMAARIEIKELGDPAHQKKITDAVQALDGVIETKIEKGALHVSYDPLATTERKIEQAIRSTGTTIKAAATDTEGAHPDLPT
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.