NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GPICI_9098279

Scaffold GPICI_9098279


Overview

Basic Information
Taxon OID2088090015 Open in IMG/M
Scaffold IDGPICI_9098279 Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Iowa, Continuous Corn soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1056
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m).1016
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040395Metagenome / Metatranscriptome162Y
F043689Metagenome / Metatranscriptome156Y
F050357Metagenome / Metatranscriptome145N

Sequences

Protein IDFamilyRBSSequence
GPICI_03526130F040395N/AIIGAGAGIPPEMSNATSWTIAESFVLLVGYVLACVVAVWFVAWVDLKLSSRRLFREIYRELGIGRHPPR
GPICI_03526140F050357AGGAGVEGIRLWRANRQKLVGMVYLDQGVLDLDIQDDHERALVEDVLEQTGQVTWSFSRFDEGEWQENIAEPRTERWLWFVVANILYPMGYQADLGISEDGEPTTG
GPICI_03526150F043689AGGAGGMTILMDTVRIEAPKRSPARPASPLDPSWNDGSEIPSSERSVQDRSRSTQWDRLAMGHGQSLWREAA
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