NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold MXTR_Contig866

Scaffold MXTR_Contig866


Overview

Basic Information
Taxon OID2088090020 Open in IMG/M
Scaffold IDMXTR_Contig866 Open in IMG/M
Source Dataset NameSample MX_TR1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterNational Research Council of Canada
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1234
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Stomach → Endoperitrophic Space → Rumen → Rumen Microbial Communities Of Musk Oxen From Alaska

Source Dataset Sampling Location
Location NameFairbanks, Alaska
CoordinatesLat. (o)64.880776Long. (o)-147.869984Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013849Metagenome / Metatranscriptome267Y

Sequences

Protein IDFamilyRBSSequence
MXTR_00162570F013849GGAGMDNSFLTSIFDFTRLGCNKLPKKDLVEKVKKYSPKMKDLNENLAYYFSIIICYSGEEPAFLQAALKQLESLGDNQENQKKLESILELIGDVCENSQLNHDDLLSKLEALKKKLGNKVSDSVSKIVGKIGVSNPIGFINKLIKQRQDQDSRVSLKEFLSLVEKKNIKITDANIDGLIMWLLNTPKLEEENTNKYVGGCIGLIVKLDKALFDKYINLLKENTGFKKSSLLYCAKEIFKSKLDFDSETLKPIYDQILEGMKNKERLIKEHSLQALSYLQYKYQKDLLSFYLIEENRKFIGQSCKTDKAYIKEADFGNGNKIVEDSGKGIRQAALDIETFMIVNYPNKIIFEEIVPLMIECLLDTEDYLQQIVYNNLIKLTKLKPTAFLPYG
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