NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold MXFH_Contig56201

Scaffold MXFH_Contig56201


Overview

Basic Information
Taxon OID2088090023 Open in IMG/M
Scaffold IDMXFH_Contig56201 Open in IMG/M
Source Dataset NameSample MXFH
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterNational Research Council of Canada
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)863
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Midgut → Unclassified → Rumen → Rumen Microbial Communities Of Musk Oxen From Alaska

Source Dataset Sampling Location
Location NameFairbanks, Alaska
CoordinatesLat. (o)64.880776Long. (o)-147.869984Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F067245Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
MXFH_00551850F067245N/ALHFNSVDWVRTGITFNKDIIKDQTDVNCPQFDIYCILEDLIQFYTLKSGWKNCFRNENHSLKNGDNVTITLKNGELRYAVNDEDLGGFIKVDLCDKKEMYLLVHTRNEKV
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