NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold BSEYNP_contig00905__length_5037___numreads_105

Scaffold BSEYNP_contig00905__length_5037___numreads_105


Overview

Basic Information
Taxon OID2100351008 Open in IMG/M
Scaffold IDBSEYNP_contig00905__length_5037___numreads_105 Open in IMG/M
Source Dataset NameHot spring microbial communities from Beowulf Spring, Yellowstone National Park, Wyoming, USA - YNP_Beowulf Spring_E
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5037
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota → Candidatus Marsarchaeota group 2 → Candidatus Marsarchaeota G2 archaeon BE_D(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Source Dataset Sampling Location
Location NameNorris Geyser Basin, Yellowstone National Park
CoordinatesLat. (o)44.733Long. (o)-110.708917Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006070Metagenome / Metatranscriptome382N
F040183Metagenome / Metatranscriptome162N

Sequences

Protein IDFamilyRBSSequence
BSEYNP_01270500F006070AGGMTLYPYLVVDLPITDTNTHTYRTNPFNPLTPTQPGISLIRLGESVPPVRAFNIYVYNYANAALNVQVIANENAKNYQYGALLDGLDYQSESGYPDFNVGSAVAVPAGSLSTPSVQAIQSDFYKDAAERYLSVALTYSATPTSGFVRAHIDLFYEGF
BSEYNP_01270540F040183AGAAGGVKLKYPFPQRFHYLTALGGYLTPNTTIVASGANTGPLTANTVCDFVQTPNHKELAVNLTIQAVSGTFSTGQGLTAYLDVLDPVEPQNVNANSSERPPVLELKLNSTAITTAPTTIRLIIANGVATVWINNASTVLGYMNVPYIWQVRFAITGTSPSFSIVGTYEARE
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Institute for Fundamental Biomedical Research
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