NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold ASMM170b_GM97KZC01ALFUP

Scaffold ASMM170b_GM97KZC01ALFUP


Overview

Basic Information
Taxon OID2100351011 Open in IMG/M
Scaffold IDASMM170b_GM97KZC01ALFUP Open in IMG/M
Source Dataset NameMarine sediment microbial communities from Arctic Ocean, off the coast from Alaska - sample from medium methane PC12-240-170cm
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)511
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Coastal Water And Sediment → Coastal Water And Sediment Microbial Communities From Arctic Ocean, Off The Coast From Alaska

Source Dataset Sampling Location
Location NameArctic Ocean
CoordinatesLat. (o)74.0678Long. (o)-145.54687Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042580Metagenome158Y

Sequences

Protein IDFamilyRBSSequence
ASMM170b_08988900F042580N/AMARPKLPEIEKIQNRVRKRYPGSICVQDSFGQYYIQWNEENLNDTFLLDNTDTELSAWSQASITAKHEQHINRTHPLKQMLSEEKKQQNKERINIRIQKL

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