Scaffold ADL13m1u_GQIGRQ001ESM9X

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold ADL13m1u_GQIGRQ001ESM9X

Scaffold ADL13m1u_GQIGRQ001ESM9X

Overview

Basic Information
Taxon OID	2100351014 Open in IMG/M
Scaffold ID	ADL13m1u_GQIGRQ001ESM9X Open in IMG/M
Source Dataset Name	Hypersaline microbial communities from Antarctic Deep Lake - 13m 0.1um
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	519
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Hypersaline Microbial Communities From Antarctic Deep Lake

Source Dataset Sampling Location
Location Name	Deep Lake Antarctica
Coordinates	Lat. (^o)	-68.54	Long. (^o)	78.18	Alt. (m)		Depth (m)	13
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006455	Metagenome	373	Y
F084902	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
ADL13m1u_01329950	F006455	GGAG	MNQQVKPPAGWTEIEPEFEFQQQTFQRRRDGLVVAIEREGMSCYNVVTLPENYYQDNQVIDCVEVGVEPEDAAETA
ADL13m1u_01329960	F084902	N/A	IAPQLQQLAGYAPYDTTPTDIGYHIHKEDVLPAFREAYYTEAVNREI

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