NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold FWIROz_GJ87FRN02F9OMR

Scaffold FWIROz_GJ87FRN02F9OMR


Overview

Basic Information
Taxon OID2124908006 Open in IMG/M
Scaffold IDFWIROz_GJ87FRN02F9OMR Open in IMG/M
Source Dataset NameSoil microbial communities from sample at FACE Site Metagenome WIR_Oz2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)501
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Face And Otc Sites In Usa

Source Dataset Sampling Location
Location NameWisconsin Rhinelander (WIR)
CoordinatesLat. (o)45.68Long. (o)-89.63Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018066Metagenome237Y

Sequences

Protein IDFamilyRBSSequence
FWIROz_00242660F018066GGAGMKLLRAGVCALVVFGVAAHGGVEDWARAVLETGAGLLFLAWSLWFYFRRNAQLVFSPLLPPLAALSILVLGQLLFRGTASAYNTRTELLLLLADLIVLFLAVEAFRTLEDWRGFVWFGMIFGFLVSLF
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