Scaffold FWIRA_GRAM18401EWNZX

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold FWIRA_GRAM18401EWNZX

Scaffold FWIRA_GRAM18401EWNZX

Overview

Basic Information
Taxon OID	2124908009 Open in IMG/M
Scaffold ID	FWIRA_GRAM18401EWNZX Open in IMG/M
Source Dataset Name	Soil microbial communities from sample at FACE Site Metagenome WIR_Amb2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	512
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Face And Otc Sites In Usa

Source Dataset Sampling Location
Location Name	Wisconsin Rhinelander (WIR)
Coordinates	Lat. (^o)	45.68	Long. (^o)	-89.63	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F026058	Metagenome / Metatranscriptome	199	Y

Sequences

Protein ID	Family	RBS	Sequence
FWIRA_01155540	F026058	AGG	MAGLLSAGAAFAVDGPAGEKIPDFAPNPAVGWVLDRAIGTDDLQAQPGGGPGPVTYDRKYPYVPNGNGRQSTYRVADLNNPILQDWLKPSMKKANDEVIAGKVPFRARERCWPAGLPAF

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