NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold FWIRA_GRAM18402GUGCA

Scaffold FWIRA_GRAM18402GUGCA


Overview

Basic Information
Taxon OID2124908009 Open in IMG/M
Scaffold IDFWIRA_GRAM18402GUGCA Open in IMG/M
Source Dataset NameSoil microbial communities from sample at FACE Site Metagenome WIR_Amb2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)534
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales → Sphingobacteriaceae → Mucilaginibacter → unclassified Mucilaginibacter → Mucilaginibacter sp. BJC16-A38(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Face And Otc Sites In Usa

Source Dataset Sampling Location
Location NameWisconsin Rhinelander (WIR)
CoordinatesLat. (o)45.68Long. (o)-89.63Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F097869Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
FWIRA_07933230F097869AGGAGGMAADASWADILVMRNPDGSLDTFRQEETVALLTDEQIDAIRPFAEELELPADQLVLREGQTALDFLVVLRGGIEFSATDSFGKKNIPVVRLPERSFTGDLSFLRILRW
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