NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold sp300_12666842

Scaffold sp300_12666842


Overview

Basic Information
Taxon OID2124908012 Open in IMG/M
Scaffold IDsp300_12666842 Open in IMG/M
Source Dataset NameHuman Subgingival plaque microbiome from visit number 1 of subject 763496533
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterLos Alamos National Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5186
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Unclassified → Subgingival Plaque → Subgingival Plaque Microbial Communities From Los Alamos National Laboratory, Usa

Source Dataset Sampling Location
Location NameSt. Louis, MO, USA
CoordinatesLat. (o)38.646Long. (o)-90.224Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F076191Metagenome118N

Sequences

Protein IDFamilyRBSSequence
sp300_03041960F076191AGGAGGMKIIAENPAEEALLWRIKALSDEVVRQDNRYTSMPVWTILDNNKAGKDYGAVMYFTGKAAERHIEENDHHYDNPTTCIRSAHDNRELKDVIHLLILAGGNEIPSNHYGVLKDA
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