Scaffold t454_GJGVOYN01EDBLH

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold t454_GJGVOYN01EDBLH

Scaffold t454_GJGVOYN01EDBLH

Overview

Basic Information
Taxon OID	2124908015 Open in IMG/M
Scaffold ID	t454_GJGVOYN01EDBLH Open in IMG/M
Source Dataset Name	Tongue_dorsum_contig300
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Los Alamos National Laboratory
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	550
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Unclassified → Human Tongue → Human Tongue Microbial Communities From Los Alamos National Lab, Usa

Source Dataset Sampling Location
Location Name	Houston, TX
Coordinates	Lat. (^o)	29.774	Long. (^o)	-95.361032	Alt. (m)		Depth (m)	95.383
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F089055	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
t454_05761730	F089055	N/A	MSSTPECVTKTPEIEAREKLAAIFSDAEQRDNSKVNPELGKTAFDVANIPNNEAVYLCNQTLGSYGKSLDRINKNPLEVVQTIGTSLQHLRDEYKTEESCR

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