NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold OU_2_1_1_newblercontig43227

Scaffold OU_2_1_1_newblercontig43227


Overview

Basic Information
Taxon OID2124908016 Open in IMG/M
Scaffold IDOU_2_1_1_newblercontig43227 Open in IMG/M
Source Dataset NameSample 642
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterLos Alamos National Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)522
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Unclassified → Unclassified → Unclassified → Unclassified → → Environmental Microbial Communities From Lanl

Source Dataset Sampling Location
Location NameUSA
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F056724Metagenome / Metatranscriptome137Y

Sequences

Protein IDFamilyRBSSequence
OU_00723250F056724N/AKFGPYNVVTDDHGSCGNAWAVDTELRTYRVKRNRDGTFRLWRRDRGTFLTNEGQSPGACNTHGRHGSMVPAGKTGHFHGYLVGTISGGTFDPNATCPADCGFTDVFIATFFGPDATFSCFTDLTDCKFLFQYRAPRQGLRYHHWYDKGKGAGTMLHEKFRGDIAAS

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