NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold SwRhBV22_Contig_3304

Scaffold SwRhBV22_Contig_3304


Overview

Basic Information
Taxon OID2124908018 Open in IMG/M
Scaffold IDSwRhBV22_Contig_3304 Open in IMG/M
Source Dataset NameSwitchgrass rhizosphere microbial communities from Rose Lake, Michigan, USA - BV2.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)558
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere → Switchgrass Rhizosphere Microbial Communities From Michigan, Usa

Source Dataset Sampling Location
Location NameCentral Sands area of central Wisconsin.
CoordinatesLat. (o)44.166906Long. (o)-89.649965Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040753Metagenome / Metatranscriptome161Y

Sequences

Protein IDFamilyRBSSequence
SwRhBV22_00041090F040753GAGGMKRLTKISLTVAISGMVLLFKGSSPLVTTAIAQSQNTPQQQPAESTRDAPPDTTPYRRPAVREDFAPKGIRPIPLLPSLFIVDVVVNNTDPNLTNTDTFNDGET

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