NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold BSRL3_Contig_9612

Scaffold BSRL3_Contig_9612


Overview

Basic Information
Taxon OID2124908021 Open in IMG/M
Scaffold IDBSRL3_Contig_9612 Open in IMG/M
Source Dataset NameSwitchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 Bulk Soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)527
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere → Switchgrass Rhizosphere Microbial Communities From Michigan, Usa

Source Dataset Sampling Location
Location NameEast Lansing, MI
CoordinatesLat. (o)42.794771Long. (o)-84.393804Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053375Metagenome141N
F071413Metagenome122N

Sequences

Protein IDFamilyRBSSequence
BSRL3_00240500F071413N/ADLRLRKVFLFRWGVFTLSGEVLNVLNRKNEYNVESTLLTVARTGQYSSGLRRGFPVAPSIGLSVQF
BSRL3_00240510F053375AGGAGGMHVTPFGAATILVFAIASPLRAQGIEVFGGYSVNADYVQNRPAILVVDQKVSPFFSLGSGPTGFEASFKHDVRNGLGIKVDVSGYSDTFPPGPAAYCQPDSS

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