NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold beta3_all_NODE_67430_len_842_cov_9_724465

Scaffold beta3_all_NODE_67430_len_842_cov_9_724465


Overview

Basic Information
Taxon OID2124908028 Open in IMG/M
Scaffold IDbeta3_all_NODE_67430_len_842_cov_9_724465 Open in IMG/M
Source Dataset NamePermafrost microbial communities from permafrost in Bonanza Creek, Alaska - Bog Site B3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)892
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil → Soil Microbial Communities From Permafrost In Bonanza Creek, Alaska

Source Dataset Sampling Location
Location NameBonanza creek, Alaska, USA
CoordinatesLat. (o)64.7Long. (o)-148.3Alt. (m)Depth (m).3 to .7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012172Metagenome / Metatranscriptome283Y
F072990Metagenome120Y

Sequences

Protein IDFamilyRBSSequence
beta3_all_00539020F012172N/AMDAKRRALDEIAARRCAADEKRKKEAEQRQVTAEAQSAVVQ
beta3_all_00539030F072990GGAMATESLTNVVQSLTPQEQDAVLRFIDYLKGRDVSLGSGSPFLQAADEFIAKHPDLLQRLA

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