Scaffold A2_v1_NODE_12361_len_6443_cov_9_851312

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold A2_v1_NODE_12361_len_6443_cov_9_851312

Scaffold A2_v1_NODE_12361_len_6443_cov_9_851312

Overview

Basic Information
Taxon OID	2124908029 Open in IMG/M
Scaffold ID	A2_v1_NODE_12361_len_6443_cov_9_851312 Open in IMG/M
Source Dataset Name	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Active Layer A2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6493
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil → Soil Microbial Communities From Permafrost In Bonanza Creek, Alaska

Source Dataset Sampling Location
Location Name	Bonanza creek, Alaska, USA
Coordinates	Lat. (^o)	64.7	Long. (^o)	-148.3	Alt. (m)		Depth (m)	.3 to .7
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052725	Metagenome / Metatranscriptome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
A2_v1_00009570	F052725	GGAGG	MERHNHEQNLAHCRRLVAESKRDPLRNEAQLDWLLKLLADEEAEDSKSLDGTH

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