Scaffold A5_v_NODE_24118_len_5937_cov_8_010443

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold A5_v_NODE_24118_len_5937_cov_8_010443

Scaffold A5_v_NODE_24118_len_5937_cov_8_010443

Overview

Basic Information
Taxon OID	2124908036 Open in IMG/M
Scaffold ID	A5_v_NODE_24118_len_5937_cov_8_010443 Open in IMG/M
Source Dataset Name	Soil microbial communities from permafrost in Bonanza Creek, Alaska, sample from Active Layer A5
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5987
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (20.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil → Soil Microbial Communities From Permafrost In Bonanza Creek, Alaska

Source Dataset Sampling Location
Location Name	Bonanza creek, Alaska, USA
Coordinates	Lat. (^o)	64.7	Long. (^o)	-148.3	Alt. (m)		Depth (m)	.3 to .7
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F052578	Metagenome / Metatranscriptome	142	Y
F082663	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
A5_v_00013640	F082663	N/A	MHPWIHLLAIQGSASHSDGTLGVSIEIVGATAVACLLLTVTVLVLTKFRRRRDAMIVREQQARERMQELCPNGWSARILLYGEGAPLPDDASSTGDRKVCVEWTEYEEDPAGHTEVAVARRMWARTITGALRGMLADRELDVELEKIERKVIEDSTDGGETSPPTAGPRGTTDP
A5_v_00013670	F052578	GAG	LDPDLRNALLLLGLIFCGFFAVVTIYSIVDTGLRLRTYGDIGAIGLYALSLLIVVMIAAGLIGALRNPPDD

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