NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold P3_CLC_ConsensusfromContig139540

Scaffold P3_CLC_ConsensusfromContig139540


Overview

Basic Information
Taxon OID2124908041 Open in IMG/M
Scaffold IDP3_CLC_ConsensusfromContig139540 Open in IMG/M
Source Dataset NamePermafrost microbial communities from permafrost in Bonanza Creek, Alaska - Permafrost Layer P3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)720
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil → Soil Microbial Communities From Permafrost In Bonanza Creek, Alaska

Source Dataset Sampling Location
Location NameBonanza creek, Alaska, USA
CoordinatesLat. (o)64.7Long. (o)-148.3Alt. (m)Depth (m).3 to .7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027608Metagenome / Metatranscriptome194Y

Sequences

Protein IDFamilyRBSSequence
P3_CLC_01410420F027608AGGAMRRRAARVVVAALVAGSCLLACHRSPTGPGEGALATGRWTGESACLSVTETGCNLAVGCGHGQFPRPILRADGTFDVDGTYRIEVGPVSIEPAPPAHFSGAITDSRLILTVVPTAGSLQPASYSMTSTSAGTCPIPCV
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