NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold KansclcFeb2_ConsensusfromContig541072

Scaffold KansclcFeb2_ConsensusfromContig541072


Overview

Basic Information
Taxon OID2124908045 Open in IMG/M
Scaffold IDKansclcFeb2_ConsensusfromContig541072 Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Kansas assembly 1 01_01_2011
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)698
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameKansas, USA
CoordinatesLat. (o)39.1049Long. (o)-96.6054Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000336Metagenome / Metatranscriptome1274Y
F003318Metagenome / Metatranscriptome494Y

Sequences

Protein IDFamilyRBSSequence
KansclcFeb2_09088380F000336AGGMPSAGKTKRGKSSRKTSRKKSELDSALDQVTDESVAASMKEFQDLLAQAKGDTSELIRQNAQELEARLILLKKRKIDKEDFDFFVENQKRDLRVFVDSQPAEAQERAEKLTLRVLEIAARVAIALI
KansclcFeb2_09088390F003318N/AAFIDQFAVPGKRFNAAAFDAKVNEGNSKFQQAIANDKFTARRPVLVDLKGQFDADAAHLRSKASRGKVTPALASEMKKDVNKVYDHALGR
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