NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold KansclcFeb2_ConsensusfromContig54732

Scaffold KansclcFeb2_ConsensusfromContig54732


Overview

Basic Information
Taxon OID2124908045 Open in IMG/M
Scaffold IDKansclcFeb2_ConsensusfromContig54732 Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Kansas assembly 1 01_01_2011
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4279
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameKansas, USA
CoordinatesLat. (o)39.1049Long. (o)-96.6054Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F050013Metagenome / Metatranscriptome146Y

Sequences

Protein IDFamilyRBSSequence
KansclcFeb2_11956260F050013N/AAKKGPKHDLVAGSARFVVPAASVRINAHSGRNGEKARGHFFLSQGGWQLRGSATCMRVVGNRASVGGRVTKSSGVGGPPVGSGFIQLTEDNGSPGRNDRSQTFLGSSPPATCPAPTQPALVLAKGNYVVKDAT
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