Scaffold ConsensusfromContig85261

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold ConsensusfromContig85261

Scaffold ConsensusfromContig85261

Overview

Basic Information
Taxon OID	2140918007 Open in IMG/M
Scaffold ID	ConsensusfromContig85261 Open in IMG/M
Source Dataset Name	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Active_all
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1714
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil → Soil Microbial Communities From Permafrost In Bonanza Creek, Alaska

Source Dataset Sampling Location
Location Name	Bonanza creek, Alaska, USA
Coordinates	Lat. (^o)	64.7	Long. (^o)	-148.3	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009643	Metagenome / Metatranscriptome	315	Y
F012393	Metagenome / Metatranscriptome	281	Y
F026389	Metagenome / Metatranscriptome	198	Y

Sequences

Protein ID	Family	RBS	Sequence
A_all_C_00636500	F026389	N/A	PAAMLMESMPVKLVGSSKSHQKVEIVVQDVYQKDGRVYLRYAIVNGGRTVYLSAAPEVFTLNSPRAPQSLVPLANSQLAADYQLKWKGEARVPVVHTELQAPVVRPGQTAHGVIAFDLPTASEPGLRTVVKLAFPADTAGNVSAVLVL
A_all_C_00636510	F012393	N/A	MVEDRQVTTEDVLEAARRRRRLCDDVEVDDPVTADAVLAAFEARMEQRLDLGVVNRALNVFLEPRNPFEPERTRKPKMEAVIFGMLFGVAIAAFLLFNLAAPRLQVHP
A_all_C_00636520	F009643	AGG	MSNAWKARLDGALRGGEVAGLYFTTALLIVVEFCFVCWLNRIQIPDVPNAGSGFIVLPPWYQKPRFEVTLLLTILAGLLFSVCWGFWDLWQKRTKTGSWEKAMQSVRQRVKTTTFVAALTGLQLALVTWLR

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