Scaffold ConsensusfromContig8704

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold ConsensusfromContig8704

Scaffold ConsensusfromContig8704

Overview

Basic Information
Taxon OID	2140918008 Open in IMG/M
Scaffold ID	ConsensusfromContig8704 Open in IMG/M
Source Dataset Name	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Bog_all
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2195
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil → Soil Microbial Communities From Permafrost In Bonanza Creek, Alaska

Source Dataset Sampling Location
Location Name	Bonanza creek, Alaska, USA
Coordinates	Lat. (^o)	64.7	Long. (^o)	-148.3	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004633	Metagenome / Metatranscriptome	430	Y
F054972	Metagenome / Metatranscriptome	139	Y
F076221	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Bog_all_C_04683970	F076221	N/A	MLPPMNDREAVKVLIVNDDGQYLTGTATEWDFTEDRSKATVFDYHRDQVAERIEMVRKAQGRIWIAVKLDPREIYEFCDRCGCRKLAFRMFFDGRQFLCGDCRDDHSGA
Bog_all_C_04683990	F054972	N/A	MRRLVKNLRTQEYFGQGQWTPDPGQAQDFPDSGKAIDTCLRYHLTDVELVLQLEAEPQEAFDTHLRLFDYRPYG
Bog_all_C_04684000	F004633	N/A	MKFLLAIAAYGVIGLVLAWGILLAVKGEPWLLIVGFLAYAAAFAKLGCLPKKSH

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.