Scaffold NODE_2198_length_1323_cov_6.261527

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold NODE_2198_length_1323_cov_6.261527

Scaffold NODE_2198_length_1323_cov_6.261527

Overview

Basic Information
Taxon OID	2140918013 Open in IMG/M
Scaffold ID	NODE_2198_length_1323_cov_6.261527 Open in IMG/M
Source Dataset Name	Soil microbial communities from Great Prairies - Iowa soil (MSU Assemblies)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1355
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location Name	Iowa, USA
Coordinates	Lat. (^o)	41.827222	Long. (^o)	-93.008611	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006320	Metagenome / Metatranscriptome	376	Y
F050186	Metagenome	145	Y
F078299	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Iowa-Corn-GraphCirc_01051180	F050186	AGGAG	VADDVEEAARRLLRALNENQAHGREGAVVQPGEHEAHDADLGPGSILYRSAVWWLLDKGALVPDRKANKRARNASGAQHRDFAFKITRGGLEMLR
Iowa-Corn-GraphCirc_01051190	F078299	AGGA	MYRGAMYRKPKDGQSDTVRVEWGAEQPLEGQVLSYLGGRTYEVAISGQGVKVVQEQPLSPRTKAK
Iowa-Corn-GraphCirc_01051200	F006320	GGGGG	MDVYSIYKETRALADQGPRDRHYAGWAADQDDAKRRANEIYEGRDSTEAVVVIGNGPAGVEVVYRVDGKN

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