NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold NODE_2553_length_981_cov_6.613659

Scaffold NODE_2553_length_981_cov_6.613659


Overview

Basic Information
Taxon OID2140918013 Open in IMG/M
Scaffold IDNODE_2553_length_981_cov_6.613659 Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Iowa soil (MSU Assemblies)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1013
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameIowa, USA
CoordinatesLat. (o)41.827222Long. (o)-93.008611Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022488Metagenome / Metatranscriptome214Y
F063970Metagenome / Metatranscriptome129N

Sequences

Protein IDFamilyRBSSequence
Iowa-Corn-GraphCirc_02221620F063970N/AXXXRGTTMKTAAKQYAVTAALACALALMATPSTLAQTRTGVQGAGTLAQYCAPQHDISDLQRVYCRDHG
Iowa-Corn-GraphCirc_02221630F022488AGGAGMKTLIATVALATVLVAPIFTQAATAASNDVTVGGKNIGQDPDANVRLQMRRDYGSEGF

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