Scaffold NODE_2629_length_1031_cov_6.234724

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold NODE_2629_length_1031_cov_6.234724

Scaffold NODE_2629_length_1031_cov_6.234724

Overview

Basic Information
Taxon OID	2140918013 Open in IMG/M
Scaffold ID	NODE_2629_length_1031_cov_6.234724 Open in IMG/M
Source Dataset Name	Soil microbial communities from Great Prairies - Iowa soil (MSU Assemblies)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1063
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location Name	Iowa, USA
Coordinates	Lat. (^o)	41.827222	Long. (^o)	-93.008611	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012136	Metagenome / Metatranscriptome	283	Y

Sequences

Protein ID	Family	RBS	Sequence
Iowa-Corn-GraphCirc_02413820	F012136	GAG	MKKITLLALIAGAIISLEGSAAAQGIYLDFGNNPGPRYRDYDDGPRYRDRERFRGERYGDRRDRGDRGYYRPGGYKTFNGCQNGWTVQDGLCKPYRGY

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