NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold NODE_3926_length_1613_cov_7.549907

Scaffold NODE_3926_length_1613_cov_7.549907


Overview

Basic Information
Taxon OID2140918013 Open in IMG/M
Scaffold IDNODE_3926_length_1613_cov_7.549907 Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Iowa soil (MSU Assemblies)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1645
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameIowa, USA
CoordinatesLat. (o)41.827222Long. (o)-93.008611Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F052621Metagenome142Y
F082832Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Iowa-Corn-GraphCirc_00786540F082832N/AXRRELWHTGALKQVRELAFFGNRLVVSTASRVIVSRLGKQIPFLHLPPGHVLLDTLLVPFGGVLYADYDPRTDSTALFSSDCTVAGACSLMPDTRRFEGPGRIGNLIMSPDTSWIAAGWPAADQFLFFRRIPHRLGMVDAVSDVTGEFSPGGETGGVFPVITGWAP
Iowa-Corn-GraphCirc_00786550F052621N/AVVVWLVVANNLPAQQGPAADWSRARSIESSGIRVYYPRAWHASLDESTITIHSGATRIMLIDYGPHAGYFPPRPNHFELDDGDRRFLSCLGFEGWNVIFTDRGQTVQAFVKLGSGTRKSDAAELLDRLEIS
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