NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold NODE_7248_length_1453_cov_8.472127

Scaffold NODE_7248_length_1453_cov_8.472127


Overview

Basic Information
Taxon OID2140918013 Open in IMG/M
Scaffold IDNODE_7248_length_1453_cov_8.472127 Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Iowa soil (MSU Assemblies)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1485
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameIowa, USA
CoordinatesLat. (o)41.827222Long. (o)-93.008611Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013563Metagenome / Metatranscriptome270Y
F032455Metagenome / Metatranscriptome180Y

Sequences

Protein IDFamilyRBSSequence
Iowa-Corn-GraphCirc_03838130F013563N/AMRTPLPKTNAALTEATFRAPPYLLSWGVLAAAMIVGMHRMPLALYTPIDGEWAKWNVEAILHFGKVFDLSPYSMLAGMGSMYFPNLPWLNPGALALGLPFSDPTNNIISYAVYAAELAVSILVLARVIGFSWLMAXXXXXXXX
Iowa-Corn-GraphCirc_03838140F032455N/AXXXWYSLAPYYAHLQAVLNGATAVLLLCGRQRDWRLNAVLAAGFLALFISGLLSAPFTFVFAAPAYVAISAALILARGPRASEWAWKIAAIALCLMFFFGSGLLDYYLGTIATAGRTPTTAMAWNRLLSADAWLRFIRDHSLCGDPRLMLCIKDRGAWLQIAALCGAVLAIVTRRGDIRTAAWALIGYIGXXXXXXXX
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