Scaffold NODE_541179_length_11345_cov_15.028999

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold NODE_541179_length_11345_cov_15.028999

Scaffold NODE_541179_length_11345_cov_15.028999

Overview

Basic Information
Taxon OID	2140918024 Open in IMG/M
Scaffold ID	NODE_541179_length_11345_cov_15.028999 Open in IMG/M
Source Dataset Name	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Bog_all
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	11395
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (68.75%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil → Soil Microbial Communities From Permafrost In Bonanza Creek, Alaska

Source Dataset Sampling Location
Location Name	Bonanza creek, Alaska, USA
Coordinates	Lat. (^o)	64.7	Long. (^o)	-148.3	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F092954	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
B_all_v_02245750	F092954	N/A	VTGLPGKLPARDFEEIRLAEALERGRCPVCDARQEASYAALRGLAREGATDRGLRDQMDGGLGFCQPHSVGLSRMELQQTSSQLATAVLLDAVLRRRLATLKKLAGNDAGSQSRGLAELADPRCPVCARIAESSLAAARRLLDLSADPAWSAALGSAEICLDDLYSLWALAAAGPKESRQRWSIIVSAQLRRLEALQKTLADYAHNSTHDRRYLITPEQQEAGAASIRFFGGSPDRDRQR

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