NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold NODE_29229_length_3637_cov_4.091284

Scaffold NODE_29229_length_3637_cov_4.091284


Overview

Basic Information
Taxon OID2140918032 Open in IMG/M
Scaffold IDNODE_29229_length_3637_cov_4.091284 Open in IMG/M
Source Dataset NameBovine rumen microbial communities from Vernon, TX, USA, Sample 669
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterTexas A and M University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3679
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Bovine Rumen → Bovine Rumen Microbial Communities From Vernon, Tx, Usa

Source Dataset Sampling Location
Location NameVernon, Texas
CoordinatesLat. (o)34.154Long. (o)-99.264Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057003Metagenome / Metatranscriptome137Y

Sequences

Protein IDFamilyRBSSequence
RumX_01261970F057003N/AMANFIDLTGLTYCGKEAQEIFSKDIYDIDLRQYGITFWDNVKGKMKLYTGEIGDAWQVYTCPFTPAGAASLAEAYIEPAAIKVNQENCYDTFWNTFLVDQTEISLRGGIPQTFGDWYFDKLRKKMAKEYQEIFWQGDTGRTGTTKAYLKVTDGIEKKLSALPSGNTVELSAITIGNVIEQVEKVILKGLEVAANAEVDTEGYKVFMNHNDVRMLEIALGKLCCGNSINDRFANYGRENGRIFVMGYEIVPSMISANKIIFGPARNLVLGYDTFDSHIEYKLIDMRETTGDNMFRVLAISNIAVGIIMPELFVFAEV
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