Scaffold LBLPr__contig00551

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold LBLPr__contig00551

Scaffold LBLPr__contig00551

Overview

Basic Information
Taxon OID	2149837010 Open in IMG/M
Scaffold ID	LBLPr__contig00551 Open in IMG/M
Source Dataset Name	Fresh water microbial communities from LaBonte Lake, Laramie, Wyoming, sample from pre-bloom
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1237
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Autographiviridae → environmental samples → uncultured phage MedDCM-OCT-S04-C650	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Labonte Lake, Laramie, Wyoming, Usa

Source Dataset Sampling Location
Location Name	LaBonte Lake, Laramie, Wyoming
Coordinates	Lat. (^o)	41.321	Long. (^o)	-105.586	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F059485	Metagenome / Metatranscriptome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
LBLPr_01847920	F059485	N/A	KVLSTIPDPINVGDYMISQPSFQRAIRATAKETDLSPAQVNVLAKVGRDLDDGVLNRSGKVPGSDTFKNLSTANVIGGIIGKQMFGEVPSVINKAVAPLNWLYNGTDDQIRELLVQSMLDPKLASKLLTKASTTNVEPLSKELQKKAINIGYGAAFGLSE

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