Scaffold STU__NODE_1022_len_8874_cov_12_166780

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold STU__NODE_1022_len_8874_cov_12_166780

Scaffold STU__NODE_1022_len_8874_cov_12_166780

Overview

Basic Information
Taxon OID	2149837015 Open in IMG/M
Scaffold ID	STU__NODE_1022_len_8874_cov_12_166780 Open in IMG/M
Source Dataset Name	Human fecal microbial communities from the University of Arizona (HMP) - Ef1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chinese National Human Genome Center, Beijing
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	8896
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (18.18%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → unclassified Siphoviridae → Bacteroides phage B40-8	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From The University Of Arizona, For Hmp Training

Source Dataset Sampling Location
Location Name	Bording, Denmark
Coordinates	Lat. (^o)	56.128817	Long. (^o)	9.239502	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055775	Metagenome	138	N

Sequences

Protein ID	Family	RBS	Sequence
STU_0906.00000060	F055775	N/A	MAQIAQQDNLVIEVTTTAEALDGDTKKKLIECIEGGTITDVILVTKEAEKEISHARVVSWLVDTTGDSPKYTIDIINANSGTVKAIALN

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