Scaffold STU__NODE_4730_len_12259_cov_26_543030

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold STU__NODE_4730_len_12259_cov_26_543030

Scaffold STU__NODE_4730_len_12259_cov_26_543030

Overview

Basic Information
Taxon OID	2149837023 Open in IMG/M
Scaffold ID	STU__NODE_4730_len_12259_cov_26_543030 Open in IMG/M
Source Dataset Name	Human fecal microbial communities from the University of Arizona (HMP) - UAm1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chinese National Human Genome Center, Beijing
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	12317
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From The University Of Arizona, For Hmp Training

Source Dataset Sampling Location
Location Name	Arizona, USA
Coordinates	Lat. (^o)	32.23	Long. (^o)	-110.95	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F072366	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
STU_0416.00000930	F072366	AGG	MLDILAIKADVYQLERQGKRLPVYRYLREVWQKEPPSEGLTVLALQQMVDYVDDLTVLGEPWEAENEYDLYQDFLLDVISWGLQKYRAKKRFLWQICYYVNAWATFYYIFGREITQENVEQWKKTLFEEAKERYPDSMLFEFIPHAAQLDYVWFYRLTDEQRLQIRLEVGEWNLQKNDMDQAVQSYSDDAMTWYRDNGRKLLEAKNKTNN

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