NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold SwRhRL3b_contig_3662760

Scaffold SwRhRL3b_contig_3662760


Overview

Basic Information
Taxon OID2162886006 Open in IMG/M
Scaffold IDSwRhRL3b_contig_3662760 Open in IMG/M
Source Dataset NameSwitchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)808
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere → Switchgrass Rhizosphere Microbial Communities From Michigan, Usa

Source Dataset Sampling Location
Location NameEast Lansing, MI
CoordinatesLat. (o)42.794771Long. (o)-84.393804Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F098311Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
SwRhRL3b_0670.00001230F098311GGAGGMRNSVKLKIIGLLSLLQGVFGLLRAHDWVQIGTDLFGQGLLLLPFIGAVAVMRGLFISVVALLYVLFGVGALLGKSWAWACITAAVVHLFLVVGALLQGASVLEALAWSVIPVILLFYFFSQRGDARQGA

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