Basic Information | |
---|---|
Taxon OID | 2162886007 Open in IMG/M |
Scaffold ID | SwRhRL2b_contig_3254735 Open in IMG/M |
Source Dataset Name | Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 1301 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 1 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus | (Source: IMG/M) |
Source Dataset Ecosystem |
---|
Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere → Switchgrass Rhizosphere Microbial Communities From Michigan, Usa |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | East Lansing, MI | |||||||
Coordinates | Lat. (o) | 42.794771 | Long. (o) | -84.393804 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F022723 | Metagenome / Metatranscriptome | 213 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
SwRhRL2b_0364.00007160 | F022723 | N/A | VAETSPDANELWQRILGKVPAQKAFVRNSAAAAHVLGIDGRNFQIGFAPGDKAMMDILGTQANRKLLETLLHEITGKDWSVRLTIKEDLPTRQASASQHSQPENFKEDPLIQEAIGLFNAQISQER |
⦗Top⦘ |