NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold MBSR1b_contig_265595

Scaffold MBSR1b_contig_265595


Overview

Basic Information
Taxon OID2162886012 Open in IMG/M
Scaffold IDMBSR1b_contig_265595 Open in IMG/M
Source Dataset NameMiscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1534
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_68_18(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere → Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan State University, Usa

Source Dataset Sampling Location
Location NameKellogg Biological Station, Michigan State University
CoordinatesLat. (o)42.406189Long. (o)-85.40016Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035346Metagenome172Y
F078905Metagenome116N

Sequences

Protein IDFamilyRBSSequence
MBSR1b_0193.00000300F078905AGGMSVEVGRRVFVGSVATGLPLFVGGGMPLAFAQRQSGTATNKDPVALELIAEMKRAVRGLSKAPSGEHTRRLASSLRLLAVWGTTNQLDARVKETLRGVIAREGRDVLVRREVDLAMFKAEAREFGFDGTSAAPLPSLPSVDYTARQRVVDDLLANGVTGRWRAVADMLETAANAFDRTASRRSAGMTLVAQTDPSVCRMIQQEMYNLSIQMAFWCAPWFYWVPEPCGLTTSAYLGVAATAWWYGC
MBSR1b_0193.00000310F035346GGTGGMTSKLVIPLLAVIYVAASALTYVTFRRYPDPTGVAATQWLLFYVVTVVYPAVWTIQELRLLRKLGLEQSKPLRRYAWAPVIVGGTSLLIGLSLLFPLLR
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