NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold cont_contig16010

Scaffold cont_contig16010


Overview

Basic Information
Taxon OID2166559005 Open in IMG/M
Scaffold IDcont_contig16010 Open in IMG/M
Source Dataset NameSimulated microbial communities from Lyon, France
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center454 Life Sciences
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1364
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified → Simulated → Simulated Microbial Communities From Lyon, France

Source Dataset Sampling Location
Location NameLyon, France
CoordinatesLat. (o)45.7580538Long. (o)4.7649095Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000283Metagenome / Metatranscriptome1379Y
F000336Metagenome / Metatranscriptome1274Y

Sequences

Protein IDFamilyRBSSequence
cont_0010.00002020F000336N/AMPSAGKRKRKKSSGKKSALDSALDQVTDESVAASKKEFQDLLAQAKGDTSELIRQNAQELEERLVLLKKRKIDKEDFDFFVENQKRDLRVFVDSQPAQAQERAEKLTLHVLEIAARVAIALI
cont_0010.00002030F000283N/AMNSNTAKNFVLRNLLLCAAAIAITSCGTATFSKTGSDAQIESLRNFELAFIDEFAVPGKRFNAAAFDAKVNQGNAKFQQAIADEKFTARRPVLVDLKGQFDADATHLRSKASHGKVTPGLATEMKKDVNKIYDHALGR
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