NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold E4LJNJL02BVQHD

Scaffold E4LJNJL02BVQHD


Overview

Basic Information
Taxon OID2166559011 Open in IMG/M
Scaffold IDE4LJNJL02BVQHD Open in IMG/M
Source Dataset NameHuman fecal microbial communities from France, for comparison studies - Human5 (TS28 0613)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center454 Life Sciences
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)528
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Environmental And Host-Associated → Microbial Communities From The Atlantic Ocean And Human Feces From France, Grouped Together For A Comparative Study

Source Dataset Sampling Location
Location NameSt. Chamond, France
CoordinatesLat. (o)45.460129Long. (o)4.495284Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F089054Metagenome109N

Sequences

Protein IDFamilyRBSSequence
Human5-_02007780F089054N/AGKFLVPRKIPGHTKEYTEGFTEEMVIPYRTEELNPYLRYPNQEINNNHLHSKHIRLQIREMLQIPLRDITIIDIISLP
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