NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GJ61VE201DPX2I

Scaffold GJ61VE201DPX2I


Overview

Basic Information
Taxon OID2170459007 Open in IMG/M
Scaffold IDGJ61VE201DPX2I Open in IMG/M
Source Dataset NameGrass soil microbial communities from Rothamsted Park, UK - March 2009 indirect in plug lysis (for fosmid construction) 10-21cm
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center454 Life Sciences
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)535
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil → Grass Soil Microbial Communities From Rothamsted Park Plot 3D, Harpenden, Uk

Source Dataset Sampling Location
Location NameRothamsted, Harpenden, UK
CoordinatesLat. (o)51.804241Long. (o)-0.372114Alt. (m)Depth (m).1 to .21
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022944Metagenome / Metatranscriptome212Y

Sequences

Protein IDFamilyRBSSequence
L02_03027680F022944N/AQDAKFAADNLKYSRDFYSKVHFVAIAKLDFGPGGTADFKYDRYPNGGPERIQAGDAEFARKDGKTWLRSNDWGETGKPVDAQTSKRLNNWVGLIDARLNGEPASNDPSQGATVMKFLGKEDEGEREEFVFEESKEKPKAKSYPHVSFGRYKNAKDQQVLLSEFSGPMRLGAREAKV
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