Basic Information | |
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Taxon OID | 2170459007 Open in IMG/M |
Scaffold ID | GJE5RH004I8ROC Open in IMG/M |
Source Dataset Name | Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect in plug lysis (for fosmid construction) 10-21cm |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | 454 Life Sciences |
Sequencing Status | Finished |
Scaffold Components | |
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Scaffold Length (bps) | 515 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil → Grass Soil Microbial Communities From Rothamsted Park Plot 3D, Harpenden, Uk |
Source Dataset Sampling Location | ||||||||
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Location Name | Rothamsted, Harpenden, UK | |||||||
Coordinates | Lat. (o) | 51.804241 | Long. (o) | -0.372114 | Alt. (m) | Depth (m) | .1 to .21 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F003318 | Metagenome / Metatranscriptome | 494 | Y |
Protein ID | Family | RBS | Sequence |
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L02_08231670 | F003318 | AGG | SKSESDARIESLRSFQLGFIDEFAVPGKRFNPAAFEAKVNEGDAKFQRAVADEKFTTRRPVLNDLAAQFQADAAYLRGKAGRGKVTPALASEMKKD |
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