Scaffold GA8OVOZ01EGPSX

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold GA8OVOZ01EGPSX

Scaffold GA8OVOZ01EGPSX

Overview

Basic Information
Taxon OID	2170459008 Open in IMG/M
Scaffold ID	GA8OVOZ01EGPSX Open in IMG/M
Source Dataset Name	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect DNA Tissue lysis 0-10cm
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	454 Life Sciences
Sequencing Status	Finished

Scaffold Components
Scaffold Length (bps)	500
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil → Grass Soil Microbial Communities From Rothamsted Park Plot 3D, Harpenden, Uk

Source Dataset Sampling Location
Location Name	Rothamsted, Harpenden, UK
Coordinates	Lat. (^o)	51.804241	Long. (^o)	-0.372114	Alt. (m)		Depth (m)	0 to .1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006004	Metagenome / Metatranscriptome	384	Y

Sequences

Protein ID	Family	RBS	Sequence
F48_07734830	F006004	AGGAG	MKITQTYPDALIAIHTIDSEPQRAKSAIRGLIQRFGLAFLAFTLVIGTTGCASVSAAQDERSVRALGDAFANAFVQKNAELRASLFAEDGTFVTPQGDFLQG

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