NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold G14TP7Y02IKGPB

Scaffold G14TP7Y02IKGPB


Overview

Basic Information
Taxon OID2170459019 Open in IMG/M
Scaffold IDG14TP7Y02IKGPB Open in IMG/M
Source Dataset NameLitter degradation MG4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Illinois, Urbana-Champaign
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)647
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_20CM_4_61_6(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter → Switchgrass, Maize And Mischanthus Litter Microbial Communities From University Of Illinois Energy Farm, Urbana, Il

Source Dataset Sampling Location
Location NameUniversity of Illinois Energy Farm
CoordinatesLat. (o)40.1097Long. (o)-88.2041Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004391Metagenome / Metatranscriptome440Y

Sequences

Protein IDFamilyRBSSequence
4MG_03626070F004391GGAGLLYEDETVLWRFALPRAGWWRKTPRVRLPIRPLSQSQIKQEESRKRQTWGQYRSWSRITSGVLLSVIGAVQYGTSKVFSKIVPHFDAQELRQYLHQVMATSAKPANDVVMVVDRSGSHRAHKLDTTFAHY
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